species:   Rhsol
pid:       PID0633
parent:    Rhi-milR-40
paralog:   
locus:     KB317791.1:30574-30650
matures:   ['CACAAUCCCUAUGUAGAAGUCA', 'GCUUGACAUGGGGUGUAUUG']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317791.1:30574-30650

0 out of bounds
20 alignments
13 proper strand
4 stranded perfect matches

          ***********************          *************************         
UGCUUGAAAGCCCGCUUGACAUGGGGUGUAUUGGAAGAAUCUCCGCACAAUCCCUAUGUAGAAGUCACAAUCAAGUU
.((((((......((((.(((((((((((..((((......)))).)))..))))))))..)))).....)))))).
---------------------------------------------CACAAUCCCUAUGUAGAAGUCA---------- l=22 a=1 c
-------------GCUUGACAUGGGGUGUAUUG-------------------------------------------- l=20 a=0 c*
---------------------------------------------CACAAUCCCUAUGUAGAAGUCAC--------- l=23 a=3 ma
------------CGCUUGACAUGGGGUGUAUUG-------------------------------------------- l=21 a=0 ma*

------------------ACAcGGGGUGUAUUGGAAGAAUCU----------------------------------- l=24 a=1 
-------------------CAcGGGGUGUAUUGGAAGAAUCUC---------------------------------- l=24 a=1 
----------------------GGGGUGUAUUGGAAGAAUCUCuG-------------------------------- l=23 a=1 
----------------------------UAUUGGAAGAAUCUCuGCACA---------------------------- l=21 a=1 
-----------------------------AUUGGAAGAAUCUCuGCACAAUCCC----------------------- l=25 a=1 
-------------------------------------------uGCACAAUCCCUAUGUAGAAGUC----------- l=23 a=1 
-------------------------------------------uGCACAAUCCCUAUGUAGAAGUCAC--------- l=25 a=2 
---------------------------------------------CACAAUCCCUAUGUAGAAGUCg---------- l=22 a=1 
---------------------------------------------CACAAUCCCUAUGUAGAAGUCA---------- l=22 a=1 (c)
---------------------------------------------CACAAUCCCUAUGUAGAAGUCAC--------- l=23 a=3 (ma)

mb-01011
ax-1011011
ku-01
ss-101110101100
fn-101
